cond-mat.mtrl-sci

arXiv:2503.09814v1 Announce Type: cross Abstract: The rapid development and large body of literature on machine learning interatomic potentials (MLIPs) can make it difficult to know how to proceed for researchers who are not experts but wish to use these tools. The spirit of this review is to help such researchers by serving as a practical, accessible guide to the state-of-the-art in MLIPs. This review paper covers a broad range of topics related to MLIPs, including (i) central aspects of how and why MLIPs are enablers of many exciting advancements in molecular modeling, (ii) the main underpinnings of different types of MLIPs, including their basic structure and formalism, (iii) the potentially transformative impact of universal MLIPs for both organic and inorganic systems, including an overview of the most recent advances, capabilities, downsides, and potential applications of this nascent class of MLIPs, (iv) a practical guide for estimating and understanding the execution speed of MLIPs, including guidance for users based on hardware availability, type of MLIP used, and prospective simulation size and time, (v) a manual for what MLIP a user should choose for a given application by considering hardware resources, speed requirements, energy and force accuracy requirements, as well as guidance for choosing pre-trained potentials or fitting a new potential from scratch, (vi) discussion around MLIP infrastructure, including sources of training data, pre-trained potentials, and hardware resources for training, (vii) summary of some key limitations of present MLIPs and current approaches to mitigate such limitations, including methods of including long-range interactions, handling magnetic systems, and treatment of excited states, and finally (viii) we finish with some more speculative thoughts on what the future holds for the development and application of MLIPs over the next 3-10+ years.

arXiv:2503.07378v3 Announce Type: replace-cross Abstract: Materials informatics (MI), which emerges from the integration of materials science and data science, is expected to greatly streamline the material discovery and development. The data used for MI are obtained from both computational and experimental studies, while their integration remains challenging. In our previous study, we reported the integration of these datasets by applying a machine learning model that captures trends hidden in the experimental datasets to compositional data stored in the computational database. In this study, we use the obtained data to construct materials maps, which visualize the relation in the structural features of materials, aiming to support study by the experimental researchers. The map is constructed using the MatDeepLearn (MDL) framework, which implements the graph-based representation of material structures, deep learning, and dimensional reduction for the map construction. We evaluate the obtained materials maps through statistical analysis and found that the MDL using message passing neural network (MPNN) enables efficient extraction of features that reflect the structural complexity of materials. Moreover, we found that this advantage does not necessarily translate into improved accuracy in predicting material properties. We attribute this unexpected outcome to the high learning performance inherent in MPNN, which can contribute to the structuring of data points within the materials map.

arXiv:2503.10471v1 Announce Type: cross Abstract: Crystal Structure Prediction (CSP), which aims to generate stable crystal structures from compositions, represents a critical pathway for discovering novel materials. While structure prediction tasks in other domains, such as proteins, have seen remarkable progress, CSP remains a relatively underexplored area due to the more complex geometries inherent in crystal structures. In this paper, we propose Siamese foundation models specifically designed to address CSP. Our pretrain-finetune framework, named DAO, comprises two complementary foundation models: DAO-G for structure generation and DAO-P for energy prediction. Experiments on CSP benchmarks (MP-20 and MPTS-52) demonstrate that our DAO-G significantly surpasses state-of-the-art (SOTA) methods across all metrics. Extensive ablation studies further confirm that DAO-G excels in generating diverse polymorphic structures, and the dataset relaxation and energy guidance provided by DAO-P are essential for enhancing DAO-G's performance. When applied to three real-world superconductors ($\text{CsV}_3\text{Sb}_5$, $ \text{Zr}_{16}\text{Rh}_8\text{O}_4$ and $\text{Zr}_{16}\text{Pd}_8\text{O}_4$) that are known to be challenging to analyze, our foundation models achieve accurate critical temperature predictions and structure generations. For instance, on $\text{CsV}_3\text{Sb}_5$, DAO-G generates a structure close to the experimental one with an RMSE of 0.0085; DAO-P predicts the $T_c$ value with high accuracy (2.26 K vs. the ground-truth value of 2.30 K). In contrast, conventional DFT calculators like Quantum Espresso only successfully derive the structure of the first superconductor within an acceptable time, while the RMSE is nearly 8 times larger, and the computation speed is more than 1000 times slower. These compelling results collectively highlight the potential of our approach for advancing materials science research and development.

arXiv:2503.05577v1 Announce Type: cross Abstract: Powder X-ray diffraction (pXRD) experiments are a cornerstone for materials structure characterization. Despite their widespread application, analyzing pXRD diffractograms still presents a significant challenge to automation and a bottleneck in high-throughput discovery in self-driving labs. Machine learning promises to resolve this bottleneck by enabling automated powder diffraction analysis. A notable difficulty in applying machine learning to this domain is the lack of sufficiently sized experimental datasets, which has constrained researchers to train primarily on simulated data. However, models trained on simulated pXRD patterns showed limited generalization to experimental patterns, particularly for low-quality experimental patterns with high noise levels and elevated backgrounds. With the Open Experimental Powder X-Ray Diffraction Database (opXRD), we provide an openly available and easily accessible dataset of labeled and unlabeled experimental powder diffractograms. Labeled opXRD data can be used to evaluate the performance of models on experimental data and unlabeled opXRD data can help improve the performance of models on experimental data, e.g. through transfer learning methods. We collected \numpatterns diffractograms, 2179 of them labeled, from a wide spectrum of materials classes. We hope this ongoing effort can guide machine learning research toward fully automated analysis of pXRD data and thus enable future self-driving materials labs.

arXiv:2503.05525v1 Announce Type: cross Abstract: The predictive accuracy of density functional theory (DFT) for alloy formation enthalpies is often limited by intrinsic energy resolution errors, particularly in ternary phase stability calculations. In this work, we present a machine learning (ML) approach to systematically correct these errors, improving the reliability of first-principles predictions. A neural network model has been trained to predict the discrepancy between DFT-calculated and experimentally measured enthalpies for binary and ternary alloys and compounds. The model utilizes a structured feature set comprising elemental concentrations, atomic numbers, and interaction terms to capture key chemical and structural effects. By applying supervised learning and rigorous data curation we ensure a robust and physically meaningful correction. The model is implemented as a multi-layer perceptron (MLP) regressor with three hidden layers, optimized through leave-one-out cross-validation (LOOCV) and k-fold cross-validation to prevent overfitting. We illustrate the effectiveness of this method by applying it to the Al-Ni-Pd and Al-Ni-Ti systems, which are of interest for high-temperature applications in aerospace and protective coatings.

arXiv:2503.04776v1 Announce Type: new Abstract: Simulation-based approaches to microstructure generation can suffer from a variety of limitations, such as high memory usage, long computational times, and difficulties in generating complex geometries. Generative machine learning models present a way around these issues, but they have previously been limited by the fixed size of their generation area. We present a new microstructure generation methodology leveraging advances in inpainting using denoising diffusion models to overcome this generation area limitation. We show that microstructures generated with the presented methodology are statistically similar to grain structures generated with a kinetic Monte Carlo simulator, SPPARKS.

arXiv:2503.04870v1 Announce Type: cross Abstract: Machine learning in materials science faces challenges due to limited experimental data, as generating synthesis data is costly and time-consuming, especially with in-house experiments. Mining data from existing literature introduces issues like mixed data quality, inconsistent formats, and variations in reporting experimental parameters, complicating the creation of consistent features for the learning algorithm. Additionally, combining continuous and discrete features can hinder the learning process with limited data. Here, we propose strategies that utilize large language models (LLMs) to enhance machine learning performance on a limited, heterogeneous dataset of graphene chemical vapor deposition synthesis compiled from existing literature. These strategies include prompting modalities for imputing missing data points and leveraging large language model embeddings to encode the complex nomenclature of substrates reported in chemical vapor deposition experiments. The proposed strategies enhance graphene layer classification using a support vector machine (SVM) model, increasing binary classification accuracy from 39% to 65% and ternary accuracy from 52% to 72%. We compare the performance of the SVM and a GPT-4 model, both trained and fine-tuned on the same data. Our results demonstrate that the numerical classifier, when combined with LLM-driven data enhancements, outperforms the standalone LLM predictor, highlighting that in data-scarce scenarios, improving predictive learning with LLM strategies requires more than simple fine-tuning on datasets. Instead, it necessitates sophisticated approaches for data imputation and feature space homogenization to achieve optimal performance. The proposed strategies emphasize data enhancement techniques, offering a broadly applicable framework for improving machine learning performance on scarce, inhomogeneous datasets.

arXiv:2503.02407v2 Announce Type: replace-cross Abstract: Symmetry rules that atoms obey when they bond together to form an ordered crystal play a fundamental role in determining their physical, chemical, and electronic properties such as electrical and thermal conductivity, optical and polarization behavior, and mechanical strength. Almost all known crystalline materials have internal symmetry. Consistently generating stable crystal structures is still an open challenge, specifically because such symmetry rules are not accounted for. To address this issue, we propose WyFormer, a generative model for materials conditioned on space group symmetry. We use Wyckoff positions as the basis for an elegant, compressed, and discrete structure representation. To model the distribution, we develop a permutation-invariant autoregressive model based on the Transformer and an absence of positional encoding. WyFormer has a unique and powerful synergy of attributes, proven by extensive experimentation: best-in-class symmetry-conditioned generation, physics-motivated inductive bias, competitive stability of the generated structures, competitive material property prediction quality, and unparalleled inference speed.

arXiv:2501.08998v2 Announce Type: replace-cross Abstract: Determining whether a candidate crystalline material is thermodynamically stable depends on identifying its true ground-state structure, a central challenge in computational materials science. We introduce CrystalGRW, a diffusion-based generative model on Riemannian manifolds that proposes novel crystal configurations and can predict stable phases validated by density functional theory. The crystal properties, such as fractional coordinates, atomic types, and lattice matrices, are represented on suitable Riemannian manifolds, ensuring that new predictions generated through the diffusion process preserve the periodicity of crystal structures. We incorporate an equivariant graph neural network to also account for rotational and translational symmetries during the generation process. CrystalGRW demonstrates the ability to generate realistic crystal structures that are close to their ground states with accuracy comparable to existing models, while also enabling conditional control, such as specifying a desired crystallographic point group. These features help accelerate materials discovery and inverse design by offering stable, symmetry-consistent crystal candidates for experimental validation.

arXiv:2501.10594v1 Announce Type: cross Abstract: Accurate determination of the equation of state of dense hydrogen is essential for understanding gas giants. Currently, there is still no consensus on methods for calculating its entropy, which play a fundamental role and can result in qualitatively different predictions for Jupiter's interior. Here, we investigate various aspects of entropy calculation for dense hydrogen based on ab initio molecular dynamics simulations. Specifically, we employ the recently developed flow matching method to validate the accuracy of the traditional thermodynamic integration approach. We then clearly identify pitfalls in previous attempts and propose a reliable framework for constructing the hydrogen equation of state, which is accurate and thermodynamically consistent across a wide range of temperature and pressure conditions. This allows us to conclusively address the long-standing discrepancies in Jupiter's adiabat among earlier studies, demonstrating the potential of our approach for providing reliable equations of state of diverse materials.

arXiv:2501.10385v1 Announce Type: new Abstract: The emergence of large language models (LLMs) has accelerated the development of self-driving laboratories (SDLs) for materials research. Despite their transformative potential, current SDL implementations rely on rigid, predefined protocols that limit their adaptability to dynamic experimental scenarios across different labs. A significant challenge persists in measuring how effectively AI agents can replicate the adaptive decision-making and experimental intuition of expert scientists. Here, we introduce AILA (Artificially Intelligent Lab Assistant), a framework that automates atomic force microscopy (AFM) through LLM-driven agents. Using AFM as an experimental testbed, we develop AFMBench-a comprehensive evaluation suite that challenges AI agents based on language models like GPT-4o and GPT-3.5 to perform tasks spanning the scientific workflow: from experimental design to results analysis. Our systematic assessment shows that state-of-the-art language models struggle even with basic tasks such as documentation retrieval, leading to a significant decline in performance in multi-agent coordination scenarios. Further, we observe that LLMs exhibit a tendency to not adhere to instructions or even divagate to additional tasks beyond the original request, raising serious concerns regarding safety alignment aspects of AI agents for SDLs. Finally, we demonstrate the application of AILA on increasingly complex experiments open-ended experiments: automated AFM calibration, high-resolution feature detection, and mechanical property measurement. Our findings emphasize the necessity for stringent benchmarking protocols before deploying AI agents as laboratory assistants across scientific disciplines.

arXiv:2501.10481v1 Announce Type: new Abstract: Advancements in deep learning have improved the ability to model complex, nonlinear relationships, such as those encountered in complex material inverse problems. However, the effectiveness of these methods often depends on large datasets, which are not always available. In this study, the incorporation of domain-specific knowledge of mechanical behavior is investigated to evaluate the impact on the predictive performance of the models in data-scarce scenarios. To demonstrate this, stress-strain curves were used to predict key microstructural features of porous materials, and the performance of models trained with and without domain knowledge was compared using five deep learning models: Convolutional Neural Networks, Extreme Gradient Boosting, K-Nearest Neighbors, Long Short-Term Memory, and Random Forest. The results of the models with domain-specific characteristics consistently achieved higher $R^2$ values and improved learning efficiency compared to models without prior knowledge. When the models did not include domain knowledge, the model results revealed meaningful patterns were not recognized, while those enhanced with mechanical insights showed superior feature extraction and predictions. These findings underscore the critical role of domain knowledge in guiding deep learning models, highlighting the need to combine domain expertise with data-driven approaches to achieve reliable and accurate outcomes in materials science and related fields.

arXiv:2501.10651v1 Announce Type: new Abstract: We present MOFA, an open-source generative AI (GenAI) plus simulation workflow for high-throughput generation of metal-organic frameworks (MOFs) on large-scale high-performance computing (HPC) systems. MOFA addresses key challenges in integrating GPU-accelerated computing for GPU-intensive GenAI tasks, including distributed training and inference, alongside CPU- and GPU-optimized tasks for screening and filtering AI-generated MOFs using molecular dynamics, density functional theory, and Monte Carlo simulations. These heterogeneous tasks are unified within an online learning framework that optimizes the utilization of available CPU and GPU resources across HPC systems. Performance metrics from a 450-node (14,400 AMD Zen 3 CPUs + 1800 NVIDIA A100 GPUs) supercomputer run demonstrate that MOFA achieves high-throughput generation of novel MOF structures, with CO$_2$ adsorption capacities ranking among the top 10 in the hypothetical MOF (hMOF) dataset. Furthermore, the production of high-quality MOFs exhibits a linear relationship with the number of nodes utilized. The modular architecture of MOFA will facilitate its integration into other scientific applications that dynamically combine GenAI with large-scale simulations.

arXiv:2501.11553v1 Announce Type: new Abstract: Systemic drug administration often causes off-target effects limiting the efficacy of advanced therapies. Targeted drug delivery approaches increase local drug concentrations at the diseased site while minimizing systemic drug exposure. We present a magnetically guided microrobotic drug delivery system capable of precise navigation under physiological conditions. This platform integrates a clinical electromagnetic navigation system, a custom-designed release catheter, and a dissolvable capsule for accurate therapeutic delivery. In vitro tests showed precise navigation in human vasculature models, and in vivo experiments confirmed tracking under fluoroscopy and successful navigation in large animal models. The microrobot balances magnetic material concentration, contrast agent loading, and therapeutic drug capacity, enabling effective hosting of therapeutics despite the integration complexity of its components, offering a promising solution for precise targeted drug delivery.

arXiv:2501.11225v1 Announce Type: cross Abstract: Transmission electron microscope (TEM) images are often corrupted by noise, hindering their interpretation. To address this issue, we propose a deep learning-based approach using simulated images. Using density functional theory calculations with a set of pseudo-atomic orbital basis sets, we generate highly accurate ground truth images. We introduce four types of noise into these simulations to create realistic training datasets. Each type of noise is then used to train a separate convolutional neural network (CNN) model. Our results show that these CNNs are effective in reducing noise, even when applied to images with different noise levels than those used during training. However, we observe limitations in some cases, particularly in preserving the integrity of circular shapes and avoiding visible artifacts between image patches. To overcome these challenges, we propose alternative training strategies and future research directions. This study provides a valuable framework for training deep learning models for TEM image denoising.

arXiv:2501.12149v1 Announce Type: cross Abstract: Density functional theory (DFT) is probably the most promising approach for quantum chemistry calculations considering its good balance between calculations precision and speed. In recent years, several neural network-based functionals have been developed for exchange-correlation energy approximation in DFT, DM21 developed by Google Deepmind being the most notable between them. This study focuses on evaluating the efficiency of DM21 functional in predicting molecular geometries, with a focus on the influence of oscillatory behavior in neural network exchange-correlation functionals. We implemented geometry optimization in PySCF for the DM21 functional in geometry optimization problem, compared its performance with traditional functionals, and tested it on various benchmarks. Our findings reveal both the potential and the current challenges of using neural network functionals for geometry optimization in DFT. We propose a solution extending the practical applicability of such functionals and allowing to model new substances with their help.

arXiv:2501.12222v1 Announce Type: cross Abstract: We used our developed AI search engine~(InvDesFlow) to perform extensive investigations regarding ambient stable superconducting hydrides. A cubic structure Li$_2$AuH$_6$ with Au-H octahedral motifs is identified to be a candidate. After performing thermodynamical analysis, we provide a feasible route to experimentally synthesize this material via the known LiAu and LiH compounds under ambient pressure. The further first-principles calculations suggest that Li$_2$AuH$_6$ shows a high superconducting transition temperature ($T_c$) $\sim$ 140 K under ambient pressure. The H-1$s$ electrons strongly couple with phonon modes of vibrations of Au-H octahedrons as well as vibrations of Li atoms, where the latter is not taken seriously in other previously similar cases. Hence, different from previous claims of searching metallic covalent bonds to find high-$T_c$ superconductors, we emphasize here the importance of those phonon modes with strong electron-phonon coupling (EPC). And we suggest that one can intercalate atoms into binary or ternary hydrides to introduce more potential phonon modes with strong EPC, which is an effective approach to find high-$T_c$ superconductors within multicomponent compounds.

arXiv:2404.07381v2 Announce Type: replace-cross Abstract: Exploring the structural, chemical, and physical properties of matter on the nano- and atomic scales has become possible with the recent advances in aberration-corrected electron energy-loss spectroscopy (EELS) in scanning transmission electron microscopy (STEM). However, the current paradigm of STEM-EELS relies on the classical rectangular grid sampling, in which all surface regions are assumed to be of equal a priori interest. This is typically not the case for real-world scenarios, where phenomena of interest are concentrated in a small number of spatial locations. One of foundational problems is the discovery of nanometer- or atomic scale structures having specific signatures in EELS spectra. Here we systematically explore the hyperparameters controlling deep kernel learning (DKL) discovery workflows for STEM-EELS and identify the role of the local structural descriptors and acquisition functions on the experiment progression. In agreement with actual experiment, we observe that for certain parameter combinations the experiment path can be trapped in the local minima. We demonstrate the approaches for monitoring automated experiment in the real and feature space of the system and monitor knowledge acquisition of the DKL model. Based on these, we construct intervention strategies, thus defining human-in the loop automated experiment (hAE). This approach can be further extended to other techniques including 4D STEM and other forms of spectroscopic imaging.

arXiv:2501.06745v1 Announce Type: new Abstract: The paper at hand presents an in-depth investigation into the fatigue behavior of the high-strength aluminum alloy EN AW-7020 T6 using both experimental and numerical approaches. Two types of specimens are investigated: a dog-bone specimen subjected to cyclic loading in a symmetric strain-controlled regime, and a compact tension specimen subjected to repeated loading and unloading, which leads to damage growth from the notch tip. Experimental data from these tests are used to identify the different phases of fatigue. Subsequently, a plastic-damage model is developed, incorporating J2 plasticity with Chaboche-type mixed isotropic-kinematic hardening. A detailed investigation reveals that the Chaboche model must be blended with a suitable isotropic hardening and combined with a proper damage growth model to accurately describe cyclic fatigue including large plastic strains up to failure. Multiple back-stress components with independent properties are superimposed, and exponential isotropic hardening with saturation effects is introduced to improve alignment with experimental results. For damage, different stress splits are tested, with the deviatoric/volumetric split proving successful in reproducing the desired degradation in peak stress and stiffness. A nonlinear activation function is introduced to ensure smooth transitions between tension and compression. Two damage indices, one for the deviatoric part and one for the volumetric part, are defined, each of which is governed by a distinct trilinear damage growth function. The governing differential equation of the problem is regularized by higher-order gradient terms to address the ill-posedness induced by softening. Finally, the plasticity model is calibrated using finite element simulations of the dog-bone test and subsequently applied to the cyclic loading of the compact tension specimen.

arXiv:2402.10874v2 Announce Type: replace-cross Abstract: Despite extensive research on magnetic skyrmions and antiskyrmions, a significant challenge remains in crafting nontrivial high-order skyrmionic textures with varying, or even tailor-made, topologies. We address this challenge, by focusing on a construction pathway of skyrmionic metamaterials within a monolayer thin film and suggest several skyrmionic metamaterials that are surprisingly stable, i.e., long-lived, due to a self-stabilization mechanism. This makes these new textures promising for applications. Central to our approach is the concept of 'simulated controlled assembly', in short, a protocol inspired by 'click chemistry' that allows for positioning topological magnetic structures where one likes, and then allowing for energy minimization to elucidate the stability. Utilizing high-throughput atomistic-spin-dynamic simulations alongside state-of-the-art AI-driven tools, we have isolated skyrmions (topological charge Q=1), antiskyrmions (Q=-1), and skyrmionium (Q=0). These entities serve as foundational 'skyrmionic building blocks' to form the here reported intricate textures. In this work, two key contributions are introduced to the field of skyrmionic systems. First, we present a a novel combination of atomistic spin dynamics simulations and controlled assembly protocols for the stabilization and investigation of new topological magnets. Second, using the aforementioned methods we report on the discovery of skyrmionic metamaterials.